Shinya Matsuda

Department of Bioinformatics and Systems Biology, Faculty of Science, The University of Tokyo
Sugimura Lab, Assistant professor

Research articles

1. 12. Ridwan SM, Twillie A, Poursaeid S, Beard EK, Bener MB, Antel M, Cowan AE, Matsuda S*, Inaba M*
   Diffusing fraction of niche BMP ligand safeguards stem-cell differentiation
   Nat. Commun. (2024) Accepted [Link]


2. 11. Rasouliha SH, Aguilar G, Reinger C, Matsuda S*
   Shaping and interpretation of Dpp morphogen gradient by endocytic trafficking
   bioRxiv (2023) [Link]


3. 10. Simon N, Safyan A, Pyrowolakis G*, Matsuda S*
   Dally is not essential for Dpp spreading or internalization but for Dpp stability by antagonizing Tkv-mediated Dpp internalization
   eLife (2023) [Link]


4. 9. Bauer M, Aguilar G, Wharton K, Matsuda S*, Affolter M*
   Heterodimerization-dependent secretion of bone morphogenetic proteins in Drosophila
   Dev. Cell (2023) [Link]


5. 8. Matsuda S*, Schaefer JV, Mii Y, Hori Y, Bieli D, Taira M, Plückthun A, Affolter M*
   Asymmetric requirement of Dpp/BMP morphogen dispersal in the Drosophila wing disc
   Nat. Commun. (2021) [Link]


6. 7. Vigano MA, Ell CM, Kustermann MMM, Aguilar G, Matsuda S, Zhao N, Stasevich TJ, Pyrowolakis G, Affolter M
   Protein manipulation using single copies of short peptide tags in cultured cells and in Drosophila. Melanogaster
   Development (2021) [Link]


7. 6. Galeone A, Adams JM, Matsuda S, Presa MF, Pandey A, Han SY, Tachida Y, Hirayama H, Vaccari T, Suzuki T, Lutz CM, Affolter M, Zuberi A, Jafar-Nejad H
   Regulation of BMP4/Dpp retrotranslocation and signaling by deglycosylation
   eLife (2020) [Link]


8. 5. Vigano MA, Bieli D, Schaefer JV, Jakob RP, Matsuda S, Maier T, Plückthun A, Affolter M
   DARPins recognizing mTFP1 as novel reagents for in vitro and in vivo protein manipulations
   Biol. Open (2018) [Link]


9. 4. Matsuda S*, Affolter M*.
   Dpp from the anterior stripe of cells is crucial for the growth of the Drosophila wing disc
   eLife (2017) [Link]


10. 3. Matsuda S, Blanco J, Shimmi O
    A feed-forward loop coupling extracellular BMP transport and morphogenesis in Drosophila wing
    PLoS Genetics (2013) [Link]


11. 2. Matsuda S, Yoshiyama N, Künnapuu-Vulli J, Hatakeyama M, Shimmi O
    Dpp/BMP transport mechanism is required for wing venation in the sawfly Athalia rosae
    Insect Biochem. Mol. Biol. (2013) [Link]


12. 1. Matsuda S, Shimmi O
    Directional transport and active retention of Dpp/BMP create wing vein patterns in Drosophila
    Dev. Biol. (2012) [Link]

Reviews

1. 8. Matsuda S*, Affolter M*　
   Is Drosophila Dpp/BMP morphogen spreading required for wing patterning and growth?
   Bioessays (2023) [Link]


2. 7. Lepeta K, Bauer K, Aguilar G, Vigano MA, Matsuda S, Affolter M　
   Studying Protein Function Using Nanobodies and Other Protein Binders in Drosophila
   Methods Mol. Biol. (2022) [Link]


3. 6. Matsuda S, Aguilar, G, Vigano MA, Affolter M　
   Nanobody-based GFP traps to study protein localization and function in developmental biology
   Methods Mol. Biol. (2022) [Link]


4. 5. Aguilar G, Matsuda S, Vigano MA, Affolter M　
   Using Nanobodies to Study Protein Function in Developing Organisms
   Antibodies(Basel) (2019) [Link]


5. 4. Aguilar G, Vigano MA, Affolter M*, Matsuda S*
   Reflections on the use of protein binders to study protein function in developmental biology
   Wiley Interdiscip. Rev. Dev. Biol. (2019) [Link]


6. 3. Bieli D, Alborelli I, Harmansa S, Matsuda S, Caussinus E, Affolter M
   Development and Application of Functionalized Protein Binders in Multicellular Organisms
   Int. Rev. Cell Mol. Biol. (2016) [Link]


7. 2. Matsuda S, Harmansa S, Affolter M
   BMP morphogen gradients in flies
   Cytokine Growth Factor Rev. (2016) [Link]


8. 1. Shimmi O, Matsuda S, Hatakeyama M
   Insights into the molecular mechanisms underlying diversified wing venation among insects
   Proc. Biol. Sci. (2014) [Link]